Welcome to base-resolution iDeepB document!
* The software is free to academic users ONLY; For commercial usage, please contact with us.
* Please do not use any crawler tools or submit frequently in a very short time.
* If you want to predict protein binding sites on RNA fragments, you can try our tool RBPsuite

        1. Select a cell-line-specific model for a protein




You can enter a protein name, and there will be one or two cell lines associated with each protein for you to choose from.




        2. Enter your sequence



You may input the window size of prediction manually and multiple sequences simultaneously. Due to server storage limitations, the maximum sequence length of an RNA is 50000 nucleotides.


The prediction output looks as follows:




        3. Email address (optional)




Once your job is completed, an email will be sent to your inbox.



If you use iDeepB, please cite the following paper:
Xiaojian Liu et al. iDeepB: Base-resolution binding profile of proteins on full-length RNAs with deep learning. In submisson.
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 Xiaoyong Pan