• Xiaoyong Pan, Yi Fang, XianFeng Li, Yang Yang, and Hong-Bin Shen
  RBPsuite: RNA-protein binding sites prediction suite based on deep learning.
  BMC Genomics, 2020, 21:884.  
• Kaiming Zhang, Xiaoyong Pan, Yang Yang, and Hong-Bin Shen
  CRIP: predicting circRNA-RBP interaction sites using a codon-based encoding and hybrid deep neural networks.
  RNA, 2019, 25(12):1604-1615.   [View article]
• Xiaoyong Pan, Peter Rijnbeek, Junchi Yan and Hong-Bin Shen
  Prediction of RNA-protein sequence and structure binding preferences using deep convolutional and recurrent neural networks.
  BMC Genomics, 2018, 19: 511.  [View article]
• Xiaoyong Pan and Hong-Bin Shen
  Predicting RNA-protein binding sites and motifs through combining local and global deep convolutional neural networks.
  Bioinformatics, 2018, 34: 3427-3436.  [View article]